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| Principal Investigator |
Abstract Title |
| Komandoor Achyuthan |
Multi-mode Spectroscopic High Throughput Screening (HTS) of Phenols and Monolignols [497 KB] |
| Michael W. W. Adams |
Define the Metalloproteome by Letting Metals Take the Lead: A Component of the MAGGIE Project [16 KB] |
| Paul D. Adams |
Omics Research at the Joint BioEnergy Institute (JBEI) [436 KB] |
| Martin Allgaier |
Metagenomic Characterization of Compost and Rain Forest Soil Microbial Communities [457 KB] |
| Eric Alm |
A phylogenomic approach to the evolutionary origins of microbial metabolisms [42 KB] |
| Eric Alm |
Changing patterns of selection on γ-proteobacteria revealed by the ratio of substitutions in slow:fast-evolving sites [51 KB] |
| Eric Alm |
Natural Diversity and Experimental Evolution of Environmental Stress Tolerance in Marine Bacteria [70 KB] |
| David M. Anderson |
Agricultural Considerations in Region Selection for Biofuel Economic Impact Modeling [65 KB] |
| Adam Arkin |
Analysis of a Desulfovibrio vulgaris Small RNA and Its Target Under Various Stress
Conditions [92 KB] |
| Adam Arkin |
ESPP Functional Genomics and Imaging Core (FGIC): Cell Wide Analysis of Metal-Reducing Bacteria [93 KB] |
| Adam Arkin |
Development and Analysis of Multispecies Consortia to Study Microbial Community Stress and Survival [95 KB] |
| Adam Arkin |
Microfluidic tools for single-cell genomic analysis of environmental bacteria [85 KB] |
| Adam Arkin |
Evolution and Stability in a Syntrophic Community [79 KB] |
| Adam Arkin |
Characterization of Metal-Reducing Communities and Isolates from Uranium-Contaminated Groundwater and Sediments [98 KB] |
| Adam Arkin |
A role of CO and a CO sensor protein in the energy metabolism of D. vulgaris Hildenborough [92 KB] |
| Adam Arkin |
Temporal and Spatial Organization within a Syntrophic Bacterial-Archaeal Biofilm [83 KB] |
| Adam Arkin |
Expression profiling of hypothetical genes in Desulfovibrio vulgaris leads to improved functional annotation [89 KB] |
| Adam Arkin |
The molecular mechanism of adaptation to salt stress revealed by the long-term evolution of Desulfovibrio vugaris Hildenborough [83 KB] |
| Adam Arkin |
Impact of Elevated Nitrate on Sulfate-Reducing Bacteria: Implications of inhibitory mechanisms in addition to osmotic stress [78 KB] |
| Adam Arkin |
Desulfovibrio vulgaris Hildenborough responses to salt and H2O2 stresses [93 KB] |
| Adam Arkin |
Applications of GeoChip for analysis of different microbial communities [80 KB] |
| Adam Arkin |
Microbes Online: an integrated portal for comparative functional genomics [85 KB] |
| Adam Arkin |
Functional Characterization of Microbial Genomes by Tagged Transposon Mutagenesis [79 KB] |
| Adam Arkin |
The development and application of an integrated functional genomics platform in Desulfovibrio desulfuricans G20 [70 KB] |
| Adam Arkin |
Resource for the exploration of regulons accurately predicted by the methods of comparative genomics [92 KB] |
| Adam Arkin |
Progress in the development of the RegTransBase database and the comparative analysis system [75 KB] |
| Adam Arkin |
Comparison of the sulfate-reducing capacity of Desulfovibrio vulgaris Hildenborough deleted for the operon containing qmoABC and a hypothetical protein (DVU0851) versus deletion of the hypothetical protein alone [91 KB] |
| Edward Baidoo |
The Fuels Synthesis Division of the Joint BioEnergy Institute (JBEI) [444 KB] |
| Scott E. Baker |
Toward a high throughput functional annotation pipeline for fungal glycoside hydrolases [10 KB] |
| Nitin S. Baliga |
Dynamic assembly of functional transcriptional complexes inside genes and operons [51 KB] |
| Nitin S. Baliga |
Technologies for robust and rational reengineering of microbial systems [11 KB] |
| Jill Banfield |
Community proteogenomic analysis of virus-host interactions in a natural system [20 KB] |
| Jill Banfield |
Insights into the ecology and evolution of a natural microbial ecosystem from acid mine drainage using community genomics and proteomics [81 KB] |
| Jill Banfield |
Whole Community Proteomic Approaches to Decipher Protein Information from Natural Microbial Communities [18 KB] |
| Jill Banfield |
Shotgun Proteomics and De-novo Sequencing for the Detection of Viral Signatures in Natural Microbial Communities [21 KB] |
| Laura E. Bartley |
Analysis of Putative Feruloyltransferase Transcript Levels and Cell Wall Composition During Rice Development [452 KB] |
| Eric Beers |
Towards a map of the Populus biomass protein-protein interaction network [73 KB] |
| Alexander S. Beliaev |
Metabolic Modeling for Maximizing Photobiological H2 Production in Cyanobacteria [17 KB] |
| Alan Bennett |
Intellectual property and U.S. public investments in research on biofuel technologies [56 KB] |
| Jeff Bennetzen |
Development of Genomic and Genetic Tools for Foxtail Millet, and Use of These
Tools in the Improvement of Biomass Production for Bioenergy Crops [15 KB] |
| Rex Bernardo |
NIRS Prediction of Corn Stover Cell Wall Composition and Conversion Potential, and Relationships among these Traits [27 KB] |
| Rajiv Bharadwaj |
Microfluidics for Protein Expression, Purification, and Screening [439 KB] |
| Mark D. Biggin |
Protein Complex Analysis Project (PCAP): Localization of Multi-Protein Complexes through SNAP-Tag Labeling [16 KB] |
| Mark D. Biggin |
A high throughput pipeline for identifying protein-protein interactions in Desulfovibrio vulgaris using tandem-affinity purification [22 KB] |
| Mark D. Biggin |
Protein Complex Analysis Project (PCAP): Isolation and Identification of Membrane Protein Complexes from D. vulgaris [101 KB] |
| Mark D. Biggin |
Protein Complex Analysis Project (PCAP): Survey of Large Protein Complexes in Desulfovibrio vulgaris Reveals Unexpected Structural Diversity [88 KB] |
| Mark D. Biggin |
Protein Complex Analysis Project (PCAP): Automated Particle Picking in Electron Microscopy Images [60 KB] |
| Mark D. Biggin |
Protein Complex Analysis Project (PCAP): Reconstruction of Multiple Structural Conformations of Macromolecular Complexes Studied by Single-Particle Electron Microscopy [14 KB] |
| Mark D. Biggin |
Analysis of an Intact Dissimilatory Sulfite Reductase Protein Complex from Desulfovibrio vulgaris Using an Ion Mobility QTOF Analyzer [18 KB] |
| Mark D. Biggin |
Protein Complex Analysis Project (PCAP): Introduction of Iterative MS/MS Acquisition (IMMA) to the MALDI LC MS/MS Workflow To Enable High Throughput Protein Complex Identification using Tagless Strategy [20 KB] |
| Mark D. Biggin |
Protein Complex Analysis Project (PCAP): Protein Complex Purification and Identification by ”Tagless” Strategy [17 KB] |
| David J. Bjornstad |
Implications of Alternative Intellectual Property Rights Management Approaches [58 KB] |
| Jeffrey Blanchard |
Clostridium phytofermentans: genome sequence of a model system for the direct conversion of plant biomass to fuels [53 KB] |
| Jeffrey Blanchard |
A genome-wide perspective on the regulation of plant carbohydrate conversion to biofuels in Clostridium phytofermentans [47 KB] |
| P. W. Bohn |
Three-Dimensional Spatial Profiling of Lignocellulosic Materials by Coupling Light Scattering and Mass Spectrometry [408 KB] |
| Mya Breitbart |
Characterization of viruses from an acid mine drainage system [23 KB] |
| Eoin Brodie |
Profiling Microbial Identity and Activity: Novel Applications of NanoSIMS and High Density Microarrays [74 KB] |
| E. Charles Brummer |
Assessing population genetic structure of diploid alfalfa germplasm as a prelude to association mapping [16 KB] |
| Marcia Buanafina |
Identifying genes controlling feruloylation in grass cell walls [12 KB] |
| Michelle V. Buchanan |
Protein-Protein Interactions in Rhodopseudomonas palustris at the Genomics:GTL Center for Molecular and Cellular Systems [12 KB] |
| Michelle V. Buchanan |
An Imaging-Based Assay with High Sensitivity for Confirming and Characterizing Protein Interactions [43 KB] |
| Michelle V. Buchanan |
Functional Characterization of Protein Complexes and Cellular Systems in Rhodopseudomonas palustris using Stable Isotopic Labeling and Quantitative Proteomics [44 KB] |
| Michelle V. Buchanan |
An Integrative Strategy for the Determination of the Modular Structure of Functional Networks of Rhodopseudomonas palustris [9 KB] |
| Edward S. Buckler |
Developing association mapping in polyploidy perennial biofuel grasses: Establishing the baseline on genome‐size variation [83 KB] |
| Kevin L. Childs and C. Robin Buell |
Computational Resources for Biofuel Feedstock Species [60 KB] |
| William R. Cannon |
An Approach to identifying Proteins from Microbial Communities [14 KB] |
| Nicholas C. Carpita |
Translational genomics for the improvement of switchgrass [39 KB] |
| John-Marc Chandonia |
Protein Complex Analysis Project (PCAP): High Throughput Identification and Structural Characterization of Multi-Protein Complexes During Stress Response in Desulfovibrio vulgaris Data Management and Bioinformatics Subproject [11 KB] |
| Clint Chapple |
Fast Detection of Improved Hydrolysis in Plants with Genetically Modified Lignin [22 KB] |
| Vincent Chiang |
Genomic Knowledgebase for Facilitating the Use of Woody Biomass for Fuel Ethanol
Production [78 KB] |
| Sallie W. Chisholm |
Viruses hijacking cyanobacterial carbon metabolism [78 KB] |
| Sallie W. Chisholm |
Quantitative Proteomics of Prochlorococcus: Towards an Integrated View of Gene Expression and Cellular Stoichiometry [9 KB] |
| Sallie W. Chisholm |
Flow Sorting and Whole Genome Amplification of Individual Microbes [10 KB] |
| Dylan Chivian |
JBEI Computational Biology Core [437 KB] |
| Howard Chou |
Building a de novo Synthetic Metabolic Pathway for Producing Branched-C5 Alcohols [445 KB] |
| George Church |
Annotation of the Clostridium phytofermentans ORFome by proteogenomic mapping [32 KB] |
| Frank Collart |
Protein Functional Assignment Using a Fluorescence-Based Thermal Shift Assay [17 KB] |
| Frank Collart |
Assignment of Enzymatic Function for Core Metabolic Enzymes [28 KB] |
| Robert Cottingham |
Quality Improvement Process for JGI-ORNL Microbial Annotation Pipeline [15 KB] |
| Rob Dahl |
Transcriptomic Studies of the Response to Exogenous Exposure and Endogenous Production of Biofuel Candidates in E. Coli [459 KB] |
| Bruce E. Dale |
Not So Fast Please: New Analysis Gives Much Lower Carbon Debt for Biofuels [75 KB] |
| Valérie de Crécy-Lagard |
Comparative genomics and experimental validation to find universal, globally missing genes: the universal families COG009 and CO0533 [155 KB] |
| Valérie de Crécy-Lagard |
Phylogenomics-guided validation of function for conserved unknown genes [23 KB] |
| Valérie de Crécy-Lagard |
Genome annotation: Coupling the power of plant-prokaryote comparative genomics to
experimental validation, COG0720 and COG3404 [177 KB] |
| Kristen M. DeAngelis |
Discovery And Optimization Of Lignocellulolytic Bacteria From Puerto Rican Rainforest Soils [456 KB] |
| Edward DeLong |
Bacterioplankton Community Transcriptional Response to Environmental Perturbations [75 KB] |
| Katrien M. Devos |
Resource Development in
Switchgrass, a Polyploid Perennial Biofuel Grass [9 KB] |
| G. Charles Dismukes |
Probing the interdependence of hydrogenase- and nitrogenase- dependent hydrogen production in Cyanothece sp. Miami BG043511 by genetic deletion and mutant analysis [46 KB] |
| G. Charles Dismukes |
Microalgal Biomass as Feedstock for Production of Hydrogen and Methane Fuels [80 KB] |
| G. Charles Dismukes |
A high-throughput genetic screen for large subunit hydrogenase (hoxH) enzyme presence in Cyanobacteria using whole-cell duplex PCR and novel amplification parameters [29 KB] |
| Richard A. Dixon |
Systematic modification of monolignol pathway gene expression for improved lignocellulose utilization [108 KB] |
| M. J. Doktycz |
Microbially mediated transformation of metal and metal oxide nanoparticles [63 KB] |
| Timothy J. Donohue |
Networks contributing to photosynthetic biohydrogen production in Rhodobacter sphaeroides [65 KB] |
| Kenneth H. Downing |
PCAP: Towards Localization of Functionality in Desulfovibrio vulgaris by Electron Microscopy [82 KB] |
| James A. Dumesic |
Catalytic Processing of Carbohydrates for the Production of Liquid Fuels [66 KB] |
| David Eisenberg |
Functional analysis of trace nutrient homeostasis in Chlamydomonas using next generation sequencers [9 KB] |
| Mark H. Ellisman |
Optimizing the detection of specific protein complexes in Caulobacter crescentus at the electron microscopic level [68 KB] |
| Mark H. Ellisman |
Generating, implementing and refining of a custom algorithm to localize ribosomes in tomographic reconstructions of Caulobacter crescentus [78 KB] |
| Barbara R. Evans |
Visualization of Acid-Pretreatment Effects on Lignocellulose by Integration of Neutron Scattering and Computer Simulation [16 KB] |
| Brian G. Fox |
Protein Expression Approaches to Cellulose Destruction [33 KB] |
| Jim K. Fredrickson |
Constraint-Based Metabolic Modeling Reveals High Maintenance Energy Requirement for Growth of Shewanella Oneidensis MR-1 Under Elevated O2 Tensions [20 KB] |
| George Garrity |
Release of the Taxomatic and Refinement of the SOSCC Algorithm [403 KB] |
| George Garrity |
Standards in Genomic Sciences: an Open-Access, Standards-Supportive Publication that Rapidly Disseminates Concise Genome and Metagenome Reports in Compliance with MIGS/MIMS Standards [102 KB] |
| George Garrity |
NamesforLife Semantic Resolution Services for the Life Sciences [67 KB] |
| Maria L. Ghirardi |
Development of Biologically-Based Assays to Study Rate-Limiting Factors in Algal Hydrogen Photoproduction [14 KB] |
| Bikram Gill |
Genetic Dissection of the Lignocellulosic Pathway of Wheat to Improve Biomass Quality of Grasses as a Feedstock for Biofuels [13 KB] |
| Jose L. Gonzalez |
Development of Genomic Tools for the Improvement of Prairie Cordgrass (Spartina pectinata), a Highly Productive Bioenergy Feedstock Crop [11 KB] |
| Pamela J. Green |
Profiling the small RNAs of Brachypodium distachyon [12 KB] |
| Robert P. Gunsalus |
Novel hydrogen production systems operative at thrmodynamic extremes [87 KB] |
| Masood Hadi |
High Throughput Technologies to Break the Biological Barriers to Cellulosic Fuels [445 KB] |
| Kenneth E. Hammel |
A new solution-state NMR approach to elucidate fungal and enzyme/mediator delignification pathways [51 KB] |
| Kyung-Hwan Han |
Understanding the transcriptional regulation of secondary wall biosynthesis: a step toward optimizing lignocellulosic feedstock for biofuel productivity and processing [55 KB] |
| Maria J. Harrison |
Identification of genes that regulate phosphate acquisition and plant performance during arbuscular mycorrhizal symbiosis in Medicago truncatula and Brachypodium distachyon [14 KB] |
| Caroline S. Harwood |
Mechanism of post-translational control of nitrogenase is revealed by analysis of constitutive hydrogen-producing mutants of Rhodopseudomonas palustris [61 KB] |
| Samuel P. Hazen |
Transcription factor protein interactions with cell wall gene cis-regulatory regions and their overall role in bioenergy feedstock properties [49 KB] |
| Terry C. Hazen |
Applied Environmental Microbiology Core Research on Stress Response Pathways in Metal-Reducers VIMSS:ESPP [25 KB] |
| Terry C. Hazen |
JBEI Microbial Communities Deconstruction Research Activities [443 KB] |
| Terry C. Hazen |
Protein Complex Analysis Project (PCAP): High Throughput Identification and Structural Characterization of Multi-Protein Complexes During Stress Response in Desulfovibrio vulgaris: Microbiology Subproject [89 KB] |
| Joshua L. Heazlewood |
The Utilization of Arabidopsis Genetic Variants to Understand Cell Wall Structure and Biosynthesis [450 KB] |
| Hoi-Ying N. Holman |
Synchrotron Infrared Spectromicroscopy of Cellulose Degradation Strategies of Living Cellulolytic Bacteria [14 KB] |
| Christopher G. Hunt |
In Vivo Mapping of ROS Produced by Wood Decay Fungi during Early Colonization [210 KB] |
| Andrzej Joachimiak |
Targeting Bioenergy, Environment and New Protein Families: Community Nominated JGI/MCSG Structural Genomics Pilot Project [30 KB] |
| Shawn Kaeppler |
Endogenous variation for biofuel quantity and quality traits in maize and switchgrass [82 KB] |
| Yisheng (Connie) Kang |
Inceaseing mevalonate production by engineering the metabolism of Escherichia coli [81 KB] |
| David H. Keating |
Construction of a Consolidated Bioprocessor Derived from Escherichia coli [45 KB] |
| Kenneth Keegstra |
Discovery of genes that mediate and regulate hemicellulose biosynthesis [70 KB] |
| Martin Keller |
The Improved Cellulosome: Computational Modeling to Minisomes [16 KB] |
| Martin Keller |
Isolation of novel biofuel-relevant thermophiles and the identification of extracellular cellulolytic enzymes using multi-dimensional LC-MS/MS [19 KB] |
| Martin Keller |
Genetic modification of lignin biosynthesis in switchgrass [12 KB] |
| Martin Keller |
GAUT12 (GAlactUronosylTransferase 12): A Putative Glycosyltransferase Involved In Arabidopsis Secondary Cell Wall Biosynthesis [22 KB] |
| Martin Keller |
The BioEnergy Science Center Laboratory Information Management System (LIMS) [15 KB] |
| Martin Keller |
The Use of TAIL PCR to Identify Genes Controlling Extreme Phenotypes in a Populus Activation Tagged Population [19 KB] |
| Martin Keller |
Integrated High Throughput Pretreatment and Enzymatic Hydrolysis in 96 Well Plates [17 KB] |
| Martin Keller |
The BESC Knowledgebase: An Infrastructure for Biological Discovery [55 KB] |
| Martin Keller |
New Insights on the Mechanism of Xylan Biosynthesis [14 KB] |
| Martin Keller |
Computer Simulation of Lignocellulosic Biomass [13 KB] |
| Martin Keller |
Advanced Imaging Projects in the BioEnergy Science Center (BESC) [21 KB] |
| Martin Keller |
The plant cell wall biosynthesis related Galacturonosyltransferase (GAUT) and GAUT like (GATL) genes have a different origin than the other Glycosyltransferase family 8 genes [16 KB] |
| Martin Keller |
A rapid analytical pyrolysis method for investigating genetic modification of the lignin pathway in Alfalfa (Medicago sativa) [14 KB] |
| Martin Keller |
BioEnergy Science Center Education and Outreach [12 KB] |
| Martin Keller |
Degradation of Plant Biomass Without Pretreatment by the Thermophilic Anaerobe, Anaerocellum thermophilum [15 KB] |
| Martin Keller |
Integration of genomics and bioinformatics to identify genetic differences in an ethanol tolerant Clostridium thermocellum ATCC27405 strain [15 KB] |
| Martin Keller |
Functional Identification and Characterization of Sugar-1-P Kinases in Arabidopsis [14 KB] |
| Martin Keller |
Analytical BESC Advances in Characterization of Biomass and Recalcitrance [12 KB] |
| Martin Keller |
The pANIC Vector Set for Overexpression of Transgenes and RNAi-Mediated Knockdown of Native Genes in Switchgrass (Panicum virgatum L) [22 KB] |
| Martin Keller |
Advances in Microbial Cellulose Utilization: Methods Development and Kinetics [18 KB] |
| Martin Keller |
The BioEnergy Science Center - An Overview [14 KB] |
| Martin Keller |
Metagenomics for mining new deconstructive enzymes, exploring enzyme diversity and screening cellulolytic activities [17 KB] |
| Martin Keller |
Computational Prediction of Golgi Resident Proteins in Arabidopsis thaliana [16 KB] |
| Stephen Kent |
Use of modern chemical protein synthesis techniques to experimentally validate the functional annotation of microbial genomes [194 KB] |
| Madhu Khanna |
Meeting the Demand for Biofuels: Impact on Land Use and Carbon Mitigation [10 KB] |
| Bernhard Knierim |
Electron Microscopic Imaging at JBEI [430 KB] |
Konstantinos
Konstantinidis |
Whole-genome comparative analyses across an environmental gradient
reveal surprisingly rapid bacterial adaptation mediated by horizontal gene transfer [54 KB] |
| Cheryl Kuske |
Soil Community Metagenomics at the DOE’s Climate Change Research Sites [41 KB] |
| Miriam Land |
Towards annotation of the unannotated --- a dissection of unannotated proteins in Clostridium thermocellum [65 KB] |
| Miriam Land |
Annotation of Translation Initiation Sites Using Prodigal [19 KB] |
| Carolyn A. Larabell |
Soft X-ray Tomography: A New Tool for Imaging Prokaryotic Cells [72 KB] |
| Carolyn A. Larabell |
Isotropic Soft X-ray Tomography of Eukaryotic Cells [64 KB] |
| Carolyn A. Larabell |
A New Multi-Modal Imaging Technology: High Numerical Aperture Cryogenic Light Microscopy with Correlated Soft X-ray Tomography [66 KB] |
| Charles E. Lawrence |
Phylogenetic footprinting in the Shewanellae [17 KB] |
| Jan E. Leach |
Identification of Genes That Control Biomass Production Using Rice as a Model System [42 KB] |
| Taek Soon Lee |
Microbial Production of Isoprenoid Biodiesel [426 KB] |
| John A. Leigh |
Systems Biology of Hydrogen Regulation in Methanococcus maripaludis [14 KB] |
| Chenlin Li |
A Comparative Study of Dilute acid and Ionic Liquid Pretreatment of Biomass and Model Lignocellulosics [448 KB] |
| Mary E. Lidstrom |
Coupling function to phylogeny via single-cell phenotyping [104 KB] |
| Mary S. Lipton |
Use of Proteomics Technologies for the Characterization of Proteins, Microbes and
Microbial Communities Important for Bioenergy Production [97 KB] |
| Mary S. Lipton |
Proteomics Driven Analysis of Microbes, Plants and Microbial Communities [127 KB] |
| Chang-Jun Liu |
Biochemical genomics of wood formation: O-acylesterification for alteration of lignocellulosic property [84 KB] |
| Chang-Jun Liu |
Characterization of pectin acetylesterase reveals critical roles of cell wall acylesterification in plant growth and development [64 KB] |
| Derek R. Lovley |
Dynamic Genome-scale Modeling of Geobacter species in Subsurface Environments [64 KB] |
| Derek R. Lovley |
Bioinformatic Analysis of Gene Regulation in Geobacter sulfurreducens: an Integration of Transcriptome and Sequence Information, Molecular Evolutionary Studies, and Database Management [24 KB] |
| Derek R. Lovley |
Experimental genome annotation of Geobacter sulfurreducens [15 KB] |
| Derek R. Lovley |
Novel Mechanisms Regulating the Expression of Genes in Geobacter species Important for Metal Reduction, Electricity Production, and Growth in the Subsurface [79 KB] |
| Derek R. Lovley |
The Application of Metagenomic and Metatranscriptomic Approaches to the Study of Microbial Communities in a Uranium-contaminated Subsurface Environment [76 KB] |
| Derek R. Lovley |
Novel Approaches for Genome-Scale Spatial Analysis of Gene Transcription in Biofilms: Elucidation of Differences in Metabolism throughout Geobacter sulfurreducens Biofilms Producing High Current Densities [46 KB] |
| Derek R. Lovley |
Genome Resequencing Reveals that Current-Harvesting Electrodes Select for Rare Variant of Geobacter sulfurreducens Capable of Enhanced Current Production [20 KB] |
| Derek R. Lovley |
New insights into Rhodoferax ferrireducens through genome annotation and genome-based in silico metabolic modeling [16 KB] |
| Derek R. Lovley |
Genome-wide mapping of transcriptional start sites of Geobacter sulfurreducens using high-throughput sequence methodologies [97 KB] |
| Derek R. Lovley |
Adapative Evolution of Geobacter sulfurreducens under Likely Subsurface Bioremediation Conditions Revealed with Genome Resequencing [96 KB] |
| Derek R. Lovley |
Nitrogen metabolism in the Geobacteraceae: The role of RpoN [22 KB] |
| Betty K. Mansfield |
Genome Management Information System: A Multifaceted Approach to DOE Systems Biology Research Communication and Facilitation [65 KB] |
| Costas D. Maranas |
Automated construction of genome-scale metabolic models: application to Mycoplasma genitalium [18 KB] |
| Costas D. Maranas |
Synthetic lethality analysis based on the Escherichia coli metabolic model [80 KB] |
| Costas D. Maranas |
Identification of All Engineering Interventions Leading to Targeted Overproductions [72 KB] |
| John M. Markley |
Quantification of Whole Plant Cell Wall and Plant Metabolites Using Advanced 2D 1H-13C HMQC NMR Techniques [106 KB] |
| Wesley D. Marner II |
Microbial Synthetic Biology at the Great Lakes Bioenergy Research Center: Screening, Fermentation, and Reiterative Engineering [51 KB] |
| Harley McAdams |
Control mechanisms for chromosome orientation and dynamics in Caulobacter crescentus [82 KB] |
| Harley McAdams |
Automatic Segmentation and Structural Study of the Bacterial Cell Wall in Cryo-Electron Tomography [55 KB] |
| Adrienne E. McKee |
Harnessing Genomic Recombination to Improve Microbial Metabolic Phenotypes [445 KB] |
| John C. Meeks |
Systems level approaches to understanding and manipulating heterocyst differentiation in Nostoc punctiforme: sites of hydrogenase and nitrogenase synthesis and activity [14 KB] |
| Seth Meyer |
Growth in Biofuel Markets: Long Term Environmental & Socioeconomic Impacts [15 KB] |
| Todd C. Mockler |
Brachypodium Transcriptomics [30 KB] |
| Daniel R. Noguera |
Modeling electron flow in Rhodobacter sphaeroides for the identification of potential approaches to maximize hydrogen production [93 KB] |
| Daniel R. Noguera |
Using fuel cell-mediated hydrogen conversion in photosynthetic bioreactors [41 KB] |
| Trent R. Northen |
High Throughput Mass Spectrometry Based Enzymatic Assays for Biofuels Development [451 KB] |
| Farnaz Nowroozi |
Optimizing Isoprenoid Biosynthesis [424 KB] |
| John Orban |
An integrated approach to experimental validation of putative gene functions in M. acetivorans [163 KB] |
| Andrei Osterman |
Thermotoga maritima Sugar Kinome [17 KB] |
| Andrei Osterman |
Conservation and variations in Shewanella transcriptional regulatory network [20 KB] |
| Himadri B. Pakrasi |
Development of Cyanothece as a New Model Organism for Biological Hydrogen Production [63 KB] |
| Himadri B. Pakrasi |
Grand Challenge in Membrane Biology: A systems biology study of the unicellular diazotrophic cyanobacterium Cyanothece sp. ATCC 51142 [82 KB] |
| Bernhard Palsson |
Systems-Level understanding of hydrogen production by Thermotoga maritima [11 KB] |
| Ashot Papoyan |
Tetrahymena thermophila as a novel platform for overexpression of membrane and secretory proteins [13 KB] |
| Matteo Pellegrini |
Transcriptome analysis of Chlamydomonas Reinhardtii using ultra-high-throughput sequencing [76 KB] |
| Zhaohua Peng |
Identification of Cell Wall Synthesis Regulatory Genes Controlling Biomass Characteristics and Yield in Rice (Oryza sativa) [8 KB] |
| Gary Peter |
Integrated Nondestructive Spatial and Chemical Analysis of Lignocellulosic Materials during Pretreatment and Bioconversion to Ethanol [13 KB] |
| Christopher J. Petzold |
A MRM-based Mass Spectrometry Method for Optimization of Protein Expression to Increase Biofuel Production [455 KB] |
| Brian Pfleger |
Engineering E. coli for Production of Hydrocarbons [27 KB] |
| George N. Phillips, Jr. |
Engineering Cellulases with Improved Stability [42 KB] |
| Joshua D. Rabinowitz |
Systems-level kinetic flux profiling elucidates a bifurcated TCA cycle in C. acetobutylicum [45 KB] |
| Ronald T. Raines |
Simple Chemical Transformation of Lignocellulosic Biomass into Fuels and Chemicals [110 KB] |
| John Ralph |
Streamlined Method For Biomass Whole-Cell-Wall Structural Profiling [77 KB] |
| Jennifer L. Reed |
Constraint-Based Modeling of Metabolism in Shewanella oneidensis MR-1 [12 KB] |
| Margaret Romine |
Progress in Identification of the ‘Mobilome’ Associated with 21 Sequenced Shewanella sp [19 KB] |
| Daad Saffarini |
Adenylate cyclases and anaerobic respiration in Shewanella oneidensis MR-1 [76 KB] |
| Kourosh Salehi-Ashtiani |
Transcript verification coupled with metabolic network modeling for Chlamydomonas reinhardtii [14 KB] |
| Trey Sato |
Molecular, Genetic and Genomic Approaches to Alleviate Bottlenecks in Cellulosic Ethanol Production by Yeast [81 KB] |
| Henrik Vibe Scheller |
Systematic Characterization of Glycosyltransferases Involved in Plant Cell Wall Biosynthesis [451 KB] |
| Marianne Schiffer |
Structures and redox potentials of periplasmic cytochromes from Geobacter sulfurreducens [21 KB] |
| Bari Scott |
The DNA Files® [23 KB] |
| Bari Scott |
Science Literacy Training for Public Radio Journalists [56 KB] |
| Robert A. Scott |
Systems Approach to Probing Hydrogen Regulation (SAPHyRe): the SurR redoxswitched transcriptional regulator controlling hydrogen production in Pyrococcus furiosus [20 KB] |
| John Sedbrook |
Biomass Trait Screening in a Brachypodium Mutant Population [73 KB] |
| Daniel Segrè |
Inference and integration of regulatory dynamics in metabolic network models [32 KB] |
| Daniel Segrè |
Metabolic optimality and trade-offs under combinatorial genetic and nutrient modifications [86 KB] |
| Daniel Segrè |
Experimental and computational analysis of growth-phase dependent transcriptional programs in Shewanella oneidensis [29 KB] |
| Mike Seibert |
Filling Knowledge Gaps in Biological Networks: Integrated Global Approaches to Understand H2 Metabolism in Chlamydomonas reinhardtii [16 KB] |
| Theresa Selfa |
The Biofuels Revolution: Understanding the Social, Cultural, and Economic Impacts of Biofuels Development on Rural Communities [13 KB] |
| Margrethe Serres |
Comparative analyses across an evolutionary gradient within the Shewanella genus [9 KB] |
| Harold Shanafield |
Evolution of signal transduction in a bacterial genus [52 KB] |
| Tsutomu Shimotori |
Consolidated Bioelectrochemical Processing of Cellulosic Biomass to Ethanol and Hydrogen [20 KB] |
| Blake A. Simmons |
Starting Point for Enzymatic Hydrolysis for Cellulose: Enzyme Engineering of Glycoside Hydrolase-5 Endoglucanases [459 KB] |
| Seema Singh |
Understanding Ionic Liquid Pretreatment of Lignocellulosic Biomasses [441 KB] |
| Gary Siuzdak |
Genemap-MS: high throughput mass spectrometry approaches to microbial gene annotation validation [71 KB] |
| Gary Siuzdak |
Novel Mass Spectrometry Based Platforms for the Investigation of Model Organisms [429 KB] |
| Richard D. Smith |
A New Platform for Much Higher Throughput
Comprehensive Quantitative Proteomics [17 KB] |
| Richard D. Smith |
High Throughput Comprehensive Quantitative Proteomics and Metabolomics for Genomics:GtL [72 KB] |
| Alfred M. Spormann |
Control of Shewanella oneidensis MR-1 biofilms by c-di-GMP and environmental factors [72 KB] |
| Thomas Squier |
Live-Cell Visualization of Tagged Bacterial Protein Dynamics and Turnover [123 KB] |
| Eric J. Steen |
Metabolic Engineering of Saccharomyces Cerevisiae for the Production of n-Butanol [443 KB] |
| Steven Strauss |
Epigenomics of development in Populus [48 KB] |
| F. William Studier |
A Laboratory Scientist Encounters Genome Sequences [12 KB] |
| F. Robert Tabita |
Examining the molecular basis for the utilization of alternative redox systems to maximize hydrogen production in RubisCO-compromised mutants of nonsulfur purple bacteria [14 KB] |
| John A. Tainer |
High throughput structural characterization of protein complexes in solution using Small Angle X-ray Scattering (SAXS) Combined with Mass Spectrometry (MS) [48 KB] |
| John A. Tainer |
Developed proteomics scale solution X-ray scattering (SAXS) tools applied to metabolic networks of interest from the MAGGIE program project [80 KB] |
| Kurt Thelen |
BioEnergy Cropping Systems on Marginal Land [117 KB] |
| Michael Thelen |
Probing the Architecture of the Plant Cell Wall during Deconstruction in Single Cells from Zinnia elegans [33 KB] |
| Michael Thelen |
Production of Extracellular Polymeric Substances by a Natural Acidophilic Biofilm [92 KB] |
| James M. Tiedje |
The Ribosomal Database Project: Tools and Sequences for rRNA Analysis [186 KB] |
| James M. Tiedje |
Investigating environmental specialization in a population of Shewanella baltica strains [54 KB] |
| James M. Tiedje |
Bacterial communities in the rhizosphere of biofuel crops as evaluated by 16S rRNA pyrosequencing [62 KB] |
| Christian Tobias |
An Estmicrosatellite Linkage Map of Switchgrass (Panicum Virgatum L.) and Comparison Within the Poaceae [202 KB] |
| Gerald A. Tuskan |
Genome-enabled Discovery of Carbon Sequestration Genes [19 KB] |
| Wallace E. Tyner |
Analysis of Global Economic and Environmental Impacts of a Substantial Increase in Bioenergy Production [20 KB] |
| Ed Uberbacher |
The Shewanella Knowledgebase [230 KB] |
| Miguel Vega-Sánchez |
Selection, Cloning and Functional Characterization of Rice-Diverged, Cell Wall-Related Glycosyltransferases [462 KB] |
| Wilfred Vermerris |
Genetic Dissection of Bioenergy Traits in Sorghum [9 KB] |
| John Vogel |
Insertional Mutagenesis of Brachypodium distachyon [20 KB] |
| Judy D. Wall |
Effects of mutational modification of electron pathways of Desulfovibrio strains [11 KB] |
| Peter Weber |
NanoSIP: Functional analysis of phototrophic microbial mat community members using high-resolution secondary ion mass spectrometry [112 KB] |
| Peter Weber |
NanoSIP: Linking Microbial Phylogeny to Metabolic Activity at the Single Cell Level Using Element Labeling and NanoSIMS Detection [17 KB] |
| Amy K. Wolfe |
Issues associated with the transition from science to application in a fundamental nanoscience user center [76 KB] |
J.H.
David Wu |
Pathways and Regulatory Network of Hydrogen Production from Cellulose by Clostridium thermocellum [97 KB] |
| X. Sunney Xie |
Stimulated Raman Scattering as an Imaging Tool for Lignocellulosic Biomass Conversion [9 KB] |
| Fan Yang |
Monolignol Transporters and Cell Wall Oxidases Screens [431 KB] |
| Haw Yang |
Single-Molecule Studies of Cellulose Degradation by Celluosomes [12 KB] |
| Steven M. Yannone |
The MAGGIE Project: Production and Isolation of Native and Recombinant Multiprotein Complexes and Modified Proteins from Hyperthermophilic Sulfolobus solfataricus [67 KB] |
| Jizhong Zhou |
The NapC- and CymA-Dependent Nitrate Reduction in Shewanella oneidensis MR-1 and S. putrefaciens W3-18-1 [44 KB] |
| Jizhong Zhou |
Characterization of C-type Cytochromes and Their Role in Anaerobic Respiration in Shewanella oneidensis and S. putrefaciens [76 KB] |
| Qianlai Zhuang |
Global net primary production and bioenergy potentials and the environmental consequences: An analysis with a process-based terrestrial ecosystem model [98 KB] |
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Total |
270 |
